Two early Diarmuid Foley goals put Moyle Rovers ahead and they led 2-3 to 0-7 at the break..
In the second half Commercials came back strong and points from Jason Lonergan and Ian Barnes put them ahead.
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The Commercials hit a purple patch during the second half and it was enough to see them claim their 16th title and their first since 2012.
After the game Charlie McGeever told Tipp FM Sport his team have shown real character to win it.
Clonmel Commercials will now meet Newcastlewest of Limerick in the Munster quarter final at a Tipperary venue on November 1st.
